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#214 · of 445 · by weekly downloadsMCP server

gget MCP Server

Wraps the gget bioinformatics library so an agent can run Ensembl, BLAST, AlphaFold and enrichment queries.

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Rank
#214
of 445 · by weekly downloads
Weekly downloads
40
npm + PyPI, last 7 days
GitHub stars
30
Repository on GitHub

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Install
uvx gget-mcp stdio
mcpServers
{
  "mcpServers": {
    "gget-mcp": {
      "command": "uvx",
      "args": [
        "gget-mcp",
        "stdio"
      ]
    }
  }
}
Transport
both
Runtime
Python
License
MIT
Stars
30
Tools
gget_searchgget_infogget_seqgget_refgget_blastgget_blatgget_musclegget_archs4gget_enrichrgget_pdbgget_alphafoldgget_cosmic+1

gget is an established Python toolkit that hides the interface differences between Ensembl, UniProt, NCBI BLAST, PDB, AlphaFold, ARCHS4, Enrichr, COSMIC and CellxGene behind one set of functions; this server exposes each of those functions as an MCP tool with its original name, so gget_search resolves a symbol to an Ensembl ID, gget_seq returns nucleotide or translated protein sequence, gget_alphafold predicts a structure and gget_enrichr runs pathway enrichment on a gene list. Keeping the upstream naming matters: anything written about gget in a paper or a notebook maps onto the tool surface without translation. It launches over stdio, streamable HTTP or SSE.

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