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Research & Science

Literature sweeps, source verification, data analysis and the citation discipline serious research demands.

41 skills

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  1. 01

    NotebookLM-py

    Skill    Drives Google NotebookLM from a CLI, Python or an agent.    Repo stars: —Score:0Research & Science
  2. 02

    pysam

    Skill    Reads and writes BAM, CRAM and VCF files from Python through HTSlib.    Repo stars: 34KScore:0Databases & Data
  3. 03

    PyDESeq2

    Skill    Runs bulk RNA-seq differential expression in Python instead of R.    Repo stars: 34KScore:0Databases & Data
  4. 04

    AnnData

    Skill    The h5ad data structure that sits under the scverse single-cell stack.    Repo stars: 34KScore:0Databases & Data
  5. 05

    scvi-tools

    Skill    Probabilistic single-cell models for batch correction and integration.    Repo stars: 34KScore:0Databases & Data
  6. 06

    pyOpenMS

    Skill    Mass spectrometry pipelines for proteomics and metabolomics via OpenMS.    Repo stars: 34KScore:0Research & Science
  7. 07

    Molecular Dynamics

    Skill    Sets up, runs and analyzes MD simulations with OpenMM and MDAnalysis.    Repo stars: 34KScore:0Research & Science
  8. 08

    statsmodels

    Skill    Regression, GLM and time series models with the full inference output.    Repo stars: 34KScore:0Databases & Data
  9. 09

    PyMC

    Skill    Bayesian modeling with PyMC: priors, NUTS sampling and model comparison.    Repo stars: 34KScore:0Databases & Data
  10. 10

    Matplotlib

    Skill    Direct control of Figure and Axes objects, down to the individual artist.    Repo stars: 34KScore:0Research & Science
  11. 11

    Nextflow

    Skill    Writes, runs and debugs Nextflow and nf-core pipelines.    Repo stars: 34KScore:0Research & Science
  12. 12

    Literature Review

    Skill    Runs multi-database literature searches and turns the hits into a cited review document.    Repo stars: —Score:0Research & Science
  13. 13

    Scientific Writing

    Skill    Drafts and audits manuscripts while keeping every claim tied to a traceable source.    Repo stars: —Score:0Research & Science
  14. 14

    Hypothesis Generation

    Skill    Turns an observation into rival hypotheses with predictions that can tell them apart.    Repo stars: —Score:0Research & Science
  15. 15

    Experimental Design

    Skill    Chooses and lays out a study design before any data is collected.    Repo stars: —Score:0Research & Science
  16. 16

    Statistical Power

    Skill    Works out required sample size, minimum detectable effect and power curves.    Repo stars: —Score:0Databases & Data
  17. 17

    Peer Review

    Skill    Builds a structured manuscript assessment with the confidentiality rules attached.    Repo stars: —Score:0Research & Science
  18. 18

    Scientific Visualization

    Skill    Designs and audits publication figures built with Matplotlib, Seaborn or Plotly.    Repo stars: —Score:0Research & Science
  19. 19

    RDKit Cheminformatics

    Skill    Agent guidance for RDKit: molecule parsing, descriptors, fingerprints and substructure search.    Repo stars: —Score:0Research & Science
  20. 20

    Scanpy

    Skill    Standard single-cell RNA-seq workflow from QC through clustering and marker genes.    Repo stars: —Score:0Databases & Data
  21. 21

    Biopython

    Skill    Sequence handling, format parsing and NCBI Entrez access through Biopython.    Repo stars: —Score:0Research & Science
  22. 22

    Math Olympiad

    Skill    Competition maths with adversarial verification and calibrated abstention instead of bluffing.    Repo stars: —Score:0Research & Science
  23. 23

    Boltz

    Skill    Runs Boltz structure prediction, screening and binder design jobs through the boltz-api command line.    Repo stars: 4Score:0Research & Science
  24. 24

    FiftyOne

    Skill    Eighteen FiftyOne skills for auditing a vision dataset, finding duplicates and evaluating a model.    Repo stars: 39Score:0Research & Science