Research & Science

Literature sweeps, source verification, data analysis and the citation discipline serious research demands.

21 skills

1. 01

   Statistical Power

   SkillWorks out required sample size, minimum detectable effect and power curves.▲0Databases & Data
2. 02

   NotebookLM-py

   SkillDrives Google NotebookLM from a CLI, Python or an agent.▲0Research & Science
3. 03

   PyDESeq2

   SkillRuns bulk RNA-seq differential expression in Python instead of R.▲0Databases & Data
4. 04

   AnnData

   SkillThe h5ad data structure that sits under the scverse single-cell stack.▲0Databases & Data
5. 05

   pysam

   SkillReads and writes BAM, CRAM and VCF files from Python through HTSlib.▲0Databases & Data
6. 06

   scvi-tools

   SkillProbabilistic single-cell models for batch correction and integration.▲0Databases & Data
7. 07

   pyOpenMS

   SkillMass spectrometry pipelines for proteomics and metabolomics via OpenMS.▲0Research & Science
8. 08

   Nextflow

   SkillWrites, runs and debugs Nextflow and nf-core pipelines.▲0Research & Science
9. 09

   statsmodels

   SkillRegression, GLM and time series models with the full inference output.▲0Databases & Data
10. 10

    PyMC

    SkillBayesian modeling with PyMC: priors, NUTS sampling and model comparison.▲0Databases & Data
11. 11

    Scientific Writing

    SkillDrafts and audits manuscripts while keeping every claim tied to a traceable source.▲0Research & Science
12. 12

    Experimental Design

    SkillChooses and lays out a study design before any data is collected.▲0Research & Science
13. 13

    Hypothesis Generation

    SkillTurns an observation into rival hypotheses with predictions that can tell them apart.▲0Research & Science
14. 14

    Scientific Visualization

    SkillDesigns and audits publication figures built with Matplotlib, Seaborn or Plotly.▲0Research & Science
15. 15

    Scanpy

    SkillStandard single-cell RNA-seq workflow from QC through clustering and marker genes.▲0Databases & Data
16. 16

    Biopython

    SkillSequence handling, format parsing and NCBI Entrez access through Biopython.▲0Research & Science
17. 17

    Peer Review

    SkillBuilds a structured manuscript assessment with the confidentiality rules attached.▲0Research & Science
18. 18

    Literature Review

    SkillRuns multi-database literature searches and turns the hits into a cited review document.▲0Research & Science
19. 19

    RDKit Cheminformatics

    SkillAgent guidance for RDKit: molecule parsing, descriptors, fingerprints and substructure search.▲0Research & Science
20. 20

    Matplotlib

    SkillDirect control of Figure and Axes objects, down to the individual artist.▲0Research & Science
21. 21

    Molecular Dynamics

    SkillSets up, runs and analyzes MD simulations with OpenMM and MDAnalysis.▲0Research & Science