Biopython
Sequence handling, format parsing and NCBI Entrez access through Biopython.
Install
npx skills add K-Dense-AI/scientific-agent-skills
Working with biological sequences, converting bioinformatics file formats, BLAST automation, or NCBI Entrez queries.
- Author
- K-Dense Inc.
- License
- Biopython License Agreement
Aimed at batch work and custom pipelines: reading and converting FASTA, GenBank, FASTQ, PDB and mmCIF, running or parsing BLAST, building alignments and phylogenetic trees. Entrez usage is documented alongside the identification and rate-limit expectations NCBI places on callers. The guidance targets Biopython 1.87, which fixed a parser vulnerability that matters when reading Entrez XML from untrusted sources.
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